STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadACytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (206 aa)    
Predicted Functional Partners:
GlxK
Glycerate kinase; COG: COG1929; Belongs to the glycerate kinase type-1 family.
 
 
    0.901
LdcA
LD-carboxypeptidase; COG: COG1619.
      0.819
EFV95765.1
Hypothetical protein.
  
    0.775
hisE
phosphoribosyl-ATP diphosphatase; COG: COG0140.
   
    0.739
NplT
Alpha amylase, catalytic domain protein; COG: COG0366.
      0.725
EFV95764.1
Hypothetical protein; COG: COG3008.
       0.714
EFV95767.1
Hypothetical protein.
       0.697
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.649
RsmI_1
S-adenosylmethionine-dependent methyltransferase, YraL family; COG: COG0313.
 
    0.645
FrmA
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; COG: COG1062; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
    0.609
Your Current Organism:
Lautropia mirabilis
NCBI taxonomy Id: 887898
Other names: L. mirabilis ATCC 51599, Lautropia mirabilis ATCC 51599, Lautropia mirabilis str. ATCC 51599, Lautropia mirabilis strain ATCC 51599
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