STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BtuB_1TonB-dependent receptor. (657 aa)    
Predicted Functional Partners:
EFV94838.1
TonB-dependent receptor.
 
 
 
 0.777
CirA_1
TonB-dependent receptor; COG: COG4771.
 
   
 0.740
EFV94538.1
TonB family domain protein.
 
 
 
 0.703
BfrD_1
TonB-dependent siderophore receptor; COG: COG1629.
  
   
 0.621
Soj
CobQ/CobB/MinD/ParA nucleotide binding domain protein; COG: COG1192.
    
   0.617
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.603
tolA
Protein TolA.
   
 
 0.526
FhuE
TonB-dependent siderophore receptor.
  
   
 0.523
EFV93953.1
Hypothetical protein.
       0.458
FhuA
TonB-dependent siderophore receptor.
  
   
 0.457
Your Current Organism:
Lautropia mirabilis
NCBI taxonomy Id: 887898
Other names: L. mirabilis ATCC 51599, Lautropia mirabilis ATCC 51599, Lautropia mirabilis str. ATCC 51599, Lautropia mirabilis strain ATCC 51599
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.