STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV02909.1Hypothetical protein; 2.1.1.-. (236 aa)    
Predicted Functional Partners:
EFV02907.1
Hypothetical protein.
 
 
 0.978
EFV02908.1
Eco57I restriction endonuclease.
 
 
 0.978
EFV02906.1
6-O-methylguanine DNA methyltransferase, DNA binding domain protein.
       0.522
EFV00611.1
TIGR02688 family protein; COG: COG4930.
 
    0.474
EFV01181.1
Hypothetical protein.
  
  
 0.472
FbpA
Fibronectin-binding protein A domain protein; COG: COG1293.
  
    0.459
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.441
EFV02905.1
Hypothetical protein.
       0.432
EFV01848.1
Restriction endonuclease; COG: COG1715.
 
  
 0.415
EFV02910.1
Alcohol dehydrogenase, iron-dependent; COG: COG1454.
       0.402
Your Current Organism:
Pseudoramibacter alactolyticus
NCBI taxonomy Id: 887929
Other names: P. alactolyticus ATCC 23263, Pseudoramibacter alactolyticus ATCC 23263, Pseudoramibacter alactolyticus str. ATCC 23263, Pseudoramibacter alactolyticus strain ATCC 23263
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.