STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV02516.1Cyclic nucleotide-binding domain protein. (222 aa)    
Predicted Functional Partners:
EFV00681.1
Conserved hypothetical protein TIGR03982.
  
 0.910
EFV01496.1
Hypothetical protein.
  
 0.876
nifJ
Pyruvate synthase; COG: COG0674.
    
 0.841
nifJ-2
Pyruvate synthase; COG: COG0674.
    
 0.810
pyk
Pyruvate kinase; COG: COG0469; Belongs to the pyruvate kinase family.
  
 0.777
EFV02622.1
Putative TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase; COG: COG1249; overlaps another CDS with the same product name.
   
 
 0.732
EFV02623.1
Pyridine nucleotide-disulfide oxidoreductase, dimerization domain protein; COG: COG1249; overlaps another CDS with the same product name.
   
 
 0.732
EFV00470.1
4Fe-4S binding domain protein.
 
     0.685
EFV01777.1
MIP family channel protein; COG: COG0580; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.632
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.565
Your Current Organism:
Pseudoramibacter alactolyticus
NCBI taxonomy Id: 887929
Other names: P. alactolyticus ATCC 23263, Pseudoramibacter alactolyticus ATCC 23263, Pseudoramibacter alactolyticus str. ATCC 23263, Pseudoramibacter alactolyticus strain ATCC 23263
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.