STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV01634.1Bacterial peptidase A24, N-terminal domain protein; COG: COG1989. (254 aa)    
Predicted Functional Partners:
EFV00455.1
Bacterial type II secretion system domain protein F.
 
  
 0.912
EFV00456.1
Type II/IV secretion system protein; COG: COG2804.
 
 
 0.897
EFV02094.1
Twitching motility protein; COG: COG2805.
 
   
 0.849
EFV00454.1
Prepilin-type cleavage/methylation N-terminal domain protein.
 
  
 0.776
EFV02244.1
DNA internalization competence protein ComEC/Rec2-like protein; COG: COG2333.
  
  
 0.716
dprA
DNA protecting protein DprA; COG: COG0758.
 
  
 0.640
EFV00453.1
Prepilin-type cleavage/methylation N-terminal domain protein.
  
  
 0.613
EFV01682.1
comEA protein; COG: COG1555.
   
  
 0.599
EFV02347.1
Putative DNA protecting protein DprA; COG: COG0758.
  
  
 0.564
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.558
Your Current Organism:
Pseudoramibacter alactolyticus
NCBI taxonomy Id: 887929
Other names: P. alactolyticus ATCC 23263, Pseudoramibacter alactolyticus ATCC 23263, Pseudoramibacter alactolyticus str. ATCC 23263, Pseudoramibacter alactolyticus strain ATCC 23263
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