STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV01981.1ABC transporter, substrate-binding protein, family 5; COG: COG0747. (540 aa)    
Predicted Functional Partners:
EFV01979.1
ABC transporter, permease protein; COG: COG0601.
 0.996
EFV01980.1
ABC transporter, permease protein; COG: COG1173.
 0.996
EFV01983.1
ABC transporter, ATP-binding protein; COG: COG0444.
 
 
 0.979
EFV01984.1
ABC transporter, ATP-binding protein; COG: COG4608; Belongs to the ABC transporter superfamily.
 
 0.970
nifJ
Pyruvate synthase; COG: COG0674.
  
    0.952
nifJ-2
Pyruvate synthase; COG: COG0674.
  
    0.881
EFV02010.1
ABC transporter, ATP-binding protein; COG: COG1122.
  
 
 0.779
EFV01978.1
Succinylglutamate desuccinylase/aspartoacylase family protein; COG: COG3608.
 
     0.676
EFV01348.1
ABC transporter, permease protein; COG: COG0765.
   
 
 0.526
EFV00478.1
Hypothetical protein.
    
  0.524
Your Current Organism:
Pseudoramibacter alactolyticus
NCBI taxonomy Id: 887929
Other names: P. alactolyticus ATCC 23263, Pseudoramibacter alactolyticus ATCC 23263, Pseudoramibacter alactolyticus str. ATCC 23263, Pseudoramibacter alactolyticus strain ATCC 23263
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