STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV01278.1Gram-positive signal peptide protein, YSIRK family. (254 aa)    
Predicted Functional Partners:
nifJ-2
Pyruvate synthase; COG: COG0674.
    
  0.807
cinA
Competence/damage-inducible domain protein CinA; COG: COG1058; Belongs to the CinA family.
     
 0.800
EFV01384.1
ErfK/YbiS/YcfS/YnhG; COG: COG5492.
  
 
 0.797
EFV02791.1
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase; COG: COG1410.
    
 0.795
nifJ
Pyruvate synthase; COG: COG0674.
   
  0.792
EFV02890.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; COG: COG1299.
     
 0.790
EFV01279.1
Sortase family protein; COG: COG3764.
     
 0.774
EFV02426.1
Alpha amylase, catalytic domain protein; COG: COG0366.
     
 0.771
EFV02769.1
Inosine 5-monophosphate dehydrogenase; COG: COG0516.
   
 
  0.760
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.758
Your Current Organism:
Pseudoramibacter alactolyticus
NCBI taxonomy Id: 887929
Other names: P. alactolyticus ATCC 23263, Pseudoramibacter alactolyticus ATCC 23263, Pseudoramibacter alactolyticus str. ATCC 23263, Pseudoramibacter alactolyticus strain ATCC 23263
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