STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV00490.1Methyltransferase domain protein. (334 aa)    
Predicted Functional Partners:
EFV00491.1
Hypothetical protein.
 
  
  0.874
EFV00492.1
Transcriptional regulator, AraC family.
 
     0.831
EFV00494.1
Conserved hypothetical protein TIGR02185.
 
     0.588
EFV00493.1
Transcriptional regulator, TetR family.
 
     0.585
EFV00579.1
ABC-2 type transporter.
  
     0.582
EFV01965.1
Transcriptional regulator, AraC family; COG: COG2207.
  
     0.576
EFV01960.1
Conserved hypothetical protein TIGR02185.
  
     0.541
EFV00495.1
Cobalt transport protein.
 
     0.534
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.479
EFV02044.1
GIY-YIG catalytic domain protein; COG: COG2827.
  
  
 0.473
Your Current Organism:
Pseudoramibacter alactolyticus
NCBI taxonomy Id: 887929
Other names: P. alactolyticus ATCC 23263, Pseudoramibacter alactolyticus ATCC 23263, Pseudoramibacter alactolyticus str. ATCC 23263, Pseudoramibacter alactolyticus strain ATCC 23263
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