STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFV00420.1Hypothetical protein; Belongs to the Dps family. (109 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; COG: COG0674.
    
 
 0.554
EFV02422.1
Copper-exporting ATPase; COG: COG2217.
  
  
 0.545
raiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
    0.533
nifJ-2
Pyruvate synthase; COG: COG0674.
    
 
 0.518
EFV00404.1
Hypothetical protein.
 
     0.482
EFV00426.1
Hypothetical protein.
  
     0.480
EFV02130.1
Hypothetical protein.
  
  
 0.476
EFV01795.1
Flavin reductase.
  
  
 0.476
EFV01091.1
Flavin reductase; COG: COG0655.
  
  
 0.476
EFV01496.1
Hypothetical protein.
 
  
 0.449
Your Current Organism:
Pseudoramibacter alactolyticus
NCBI taxonomy Id: 887929
Other names: P. alactolyticus ATCC 23263, Pseudoramibacter alactolyticus ATCC 23263, Pseudoramibacter alactolyticus str. ATCC 23263, Pseudoramibacter alactolyticus strain ATCC 23263
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.