Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENO18210.1 | lepB | HMPREF9004_1071 | HMPREF9004_1569 | Fatty-acid synthase I; COG: COG4981. | Signal peptidase I LepB; COG: COG0681; Belongs to the peptidase S26 family. | 0.401 |
ENO18210.1 | lspA | HMPREF9004_1071 | HMPREF9004_0113 | Fatty-acid synthase I; COG: COG4981. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.572 |
ENO19195.1 | ENO19196.1 | HMPREF9004_0114 | HMPREF9004_0115 | Cell division initiation protein; COG: COG3599. | Hypothetical protein. | 0.700 |
ENO19195.1 | dnaE | HMPREF9004_0114 | HMPREF9004_0111 | Cell division initiation protein; COG: COG3599. | DNA-directed DNA polymerase III alpha subunit; COG: COG0587. | 0.564 |
ENO19195.1 | lspA | HMPREF9004_0114 | HMPREF9004_0113 | Cell division initiation protein; COG: COG3599. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.697 |
ENO19195.1 | rluD | HMPREF9004_0114 | HMPREF9004_0112 | Cell division initiation protein; COG: COG3599. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.697 |
ENO19196.1 | ENO19195.1 | HMPREF9004_0115 | HMPREF9004_0114 | Hypothetical protein. | Cell division initiation protein; COG: COG3599. | 0.700 |
ENO19196.1 | dnaE | HMPREF9004_0115 | HMPREF9004_0111 | Hypothetical protein. | DNA-directed DNA polymerase III alpha subunit; COG: COG0587. | 0.471 |
ENO19196.1 | lspA | HMPREF9004_0115 | HMPREF9004_0113 | Hypothetical protein. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.530 |
ENO19196.1 | rluD | HMPREF9004_0115 | HMPREF9004_0112 | Hypothetical protein. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.530 |
dnaE | ENO19195.1 | HMPREF9004_0111 | HMPREF9004_0114 | DNA-directed DNA polymerase III alpha subunit; COG: COG0587. | Cell division initiation protein; COG: COG3599. | 0.564 |
dnaE | ENO19196.1 | HMPREF9004_0111 | HMPREF9004_0115 | DNA-directed DNA polymerase III alpha subunit; COG: COG0587. | Hypothetical protein. | 0.471 |
dnaE | lspA | HMPREF9004_0111 | HMPREF9004_0113 | DNA-directed DNA polymerase III alpha subunit; COG: COG0587. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.672 |
dnaE | rluD | HMPREF9004_0111 | HMPREF9004_0112 | DNA-directed DNA polymerase III alpha subunit; COG: COG0587. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.717 |
dnaE | secA | HMPREF9004_0111 | HMPREF9004_0284 | DNA-directed DNA polymerase III alpha subunit; COG: COG0587. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.820 |
ftsY | lepB | HMPREF9004_1578 | HMPREF9004_1569 | Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Signal peptidase I LepB; COG: COG0681; Belongs to the peptidase S26 family. | 0.807 |
ftsY | lspA | HMPREF9004_1578 | HMPREF9004_0113 | Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.592 |
ftsY | secA | HMPREF9004_1578 | HMPREF9004_0284 | Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.980 |
lepB | ENO18210.1 | HMPREF9004_1569 | HMPREF9004_1071 | Signal peptidase I LepB; COG: COG0681; Belongs to the peptidase S26 family. | Fatty-acid synthase I; COG: COG4981. | 0.401 |
lepB | ftsY | HMPREF9004_1569 | HMPREF9004_1578 | Signal peptidase I LepB; COG: COG0681; Belongs to the peptidase S26 family. | Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.807 |
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