Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENO17418.1 | ENO17654.1 | HMPREF9004_1824 | HMPREF9004_1564 | UvrD/REP helicase; COG: COG0210. | Smf family protein; COG: COG0758. | 0.540 |
ENO17418.1 | ENO17788.1 | HMPREF9004_1824 | HMPREF9004_1698 | UvrD/REP helicase; COG: COG0210. | Hypothetical protein. | 0.646 |
ENO17418.1 | ENO18952.1 | HMPREF9004_1824 | HMPREF9004_0287 | UvrD/REP helicase; COG: COG0210. | ComF family protein. | 0.748 |
ENO17654.1 | ENO17418.1 | HMPREF9004_1564 | HMPREF9004_1824 | Smf family protein; COG: COG0758. | UvrD/REP helicase; COG: COG0210. | 0.540 |
ENO17654.1 | ENO17788.1 | HMPREF9004_1564 | HMPREF9004_1698 | Smf family protein; COG: COG0758. | Hypothetical protein. | 0.816 |
ENO17654.1 | ENO18952.1 | HMPREF9004_1564 | HMPREF9004_0287 | Smf family protein; COG: COG0758. | ComF family protein. | 0.678 |
ENO17654.1 | xerC | HMPREF9004_1564 | HMPREF9004_1563 | Smf family protein; COG: COG0758. | Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.883 |
ENO17788.1 | ENO17418.1 | HMPREF9004_1698 | HMPREF9004_1824 | Hypothetical protein. | UvrD/REP helicase; COG: COG0210. | 0.646 |
ENO17788.1 | ENO17654.1 | HMPREF9004_1698 | HMPREF9004_1564 | Hypothetical protein. | Smf family protein; COG: COG0758. | 0.816 |
ENO17788.1 | ENO18952.1 | HMPREF9004_1698 | HMPREF9004_0287 | Hypothetical protein. | ComF family protein. | 0.752 |
ENO18952.1 | ENO17418.1 | HMPREF9004_0287 | HMPREF9004_1824 | ComF family protein. | UvrD/REP helicase; COG: COG0210. | 0.748 |
ENO18952.1 | ENO17654.1 | HMPREF9004_0287 | HMPREF9004_1564 | ComF family protein. | Smf family protein; COG: COG0758. | 0.678 |
ENO18952.1 | ENO17788.1 | HMPREF9004_0287 | HMPREF9004_1698 | ComF family protein. | Hypothetical protein. | 0.752 |
ENO18952.1 | ENO18976.1 | HMPREF9004_0287 | HMPREF9004_0311 | ComF family protein. | ABC superfamily ATP binding cassette transporter, ABC protein; COG: COG1134. | 0.729 |
ENO18952.1 | apt | HMPREF9004_0287 | HMPREF9004_1491 | ComF family protein. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.744 |
ENO18952.1 | mtrB | HMPREF9004_0287 | HMPREF9004_0289 | ComF family protein. | Sensor histidine kinase; COG: COG0642. | 0.644 |
ENO18952.1 | nagA | HMPREF9004_0287 | HMPREF9004_0459 | ComF family protein. | N-acetylglucosamine-6-phosphate deacetylase; COG: COG1820. | 0.629 |
ENO18952.1 | tyrA | HMPREF9004_0287 | HMPREF9004_1424 | ComF family protein. | Prephenate dehydrogenase; COG: COG0287. | 0.754 |
ENO18952.1 | xerC | HMPREF9004_0287 | HMPREF9004_1563 | ComF family protein. | Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.842 |
ENO18952.1 | yfiA | HMPREF9004_0287 | HMPREF9004_0286 | ComF family protein. | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.648 |
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