STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufCFeS assembly ATPase SufC; COG: COG0396. (250 aa)    
Predicted Functional Partners:
sufB
FeS assembly protein SufB; COG: COG0719.
 
 0.999
sufD
FeS assembly protein SufD; COG: COG0719.
 
 
 0.999
csdB
Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.997
nifU
SUF system FeS assembly protein; COG: COG0822.
 
  
 0.995
ENO17929.1
Metal-sulfur cluster biosynthetic enzyme; COG: COG2151.
 
  
 0.931
ENO17923.1
Transcriptional regulator; COG: COG2345.
  
    0.687
ENO17680.1
HesB/YadR/YfhF family protein; COG: COG0316; Belongs to the HesB/IscA family.
  
 
 0.612
mrp
Mrp ATPase family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.608
Your Current Organism:
Schaalia cardiffensis
NCBI taxonomy Id: 888050
Other names: Actinomyces cardiffensis F0333, S. cardiffensis F0333, Schaalia cardiffensis F0333
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