STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCDABC transporter, permease protein; COG: COG1174. (237 aa)    
Predicted Functional Partners:
opuCC
ABC transporter, substrate-binding protein, QAT family; COG: COG1732.
 
 0.999
proV
Glycine betaine/L-proline transport ATP binding subunit; COG: COG1125.
 0.998
opuCB
ABC transporter, permease protein; COG: COG1174.
 
 
 
0.989
proWX
ABC transporter, substrate-binding protein, QAT family.
 
 
0.838
proV-2
Glycine betaine/L-proline transport ATP binding subunit; COG: COG4175.
 
 0.594
lrp2
Transcriptional regulator, AsnC family; COG: COG1522.
       0.468
EFU74945.1
CBS domain protein.
    
  0.448
EFU73894.1
CBS domain protein.
    
  0.423
Your Current Organism:
Enterococcus italicus
NCBI taxonomy Id: 888064
Other names: E. italicus DSM 15952, Enterococcus italicus DSM 15952, Enterococcus italicus LMG 22039, Enterococcus italicus TP1.5, Enterococcus italicus str. DSM 15952, Enterococcus italicus strain DSM 15952
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.