BAE44_0015276 protein (Dichanthelium oligosanthes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAE44_0015276

Exosome complex exonuclease RRP44-like protein A; Belongs to the RNR ribonuclease family. (883 aa)

Predicted Functional Partners:

BAE44_0009323

0.990

BAE44_0022989

0.987

BAE44_0006810

0.978

BAE44_0014846

0.974

BAE44_0010156

0.973

BAE44_0025022

0.968

BAE44_0023612

0.966

BAE44_0015465

0.962

BAE44_0000122

0.960

BAE44_0013776

0.954

Your Current Organism:

Dichanthelium oligosanthes

NCBI taxonomy Id: 888268
Other names: D. oligosanthes, Dichanthelium oligosanthes (Schult.) Gould, Panicum oligosanthes, Panicum oligosanthes Schult.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAE44_0000122	BAE44_0006810	A0A1E5WN82	A0A1E5W445	Protein RRP6-like 3.	Exosome complex exonuclease RRP46-like protein.	0.982
BAE44_0000122	BAE44_0009323	A0A1E5WN82	A0A1E5VX37	Protein RRP6-like 3.	Uncharacterized protein.	0.981
BAE44_0000122	BAE44_0010156	A0A1E5WN82	A0A1E5VUM5	Protein RRP6-like 3.	Exosome complex component RRP41-like protein.	0.975
BAE44_0000122	BAE44_0014846	A0A1E5WN82	A0A1E5VG89	Protein RRP6-like 3.	HBS1-like protein.	0.902
BAE44_0000122	BAE44_0015276	A0A1E5WN82	A0A1E5VEY0	Protein RRP6-like 3.	Exosome complex exonuclease RRP44-like protein A; Belongs to the RNR ribonuclease family.	0.960
BAE44_0000122	BAE44_0015465	A0A1E5WN82	A0A1E5VEE2	Protein RRP6-like 3.	DExH-box ATP-dependent RNA helicase DExH10.	0.976
BAE44_0000122	BAE44_0022989	A0A1E5WN82	A0A1E5USX8	Protein RRP6-like 3.	Exosome complex component RRP45B.	0.981
BAE44_0000122	BAE44_0023612	A0A1E5WN82	A0A1E5UR46	Protein RRP6-like 3.	DExH-box ATP-dependent RNA helicase DExH9.	0.979
BAE44_0000122	BAE44_0025022	A0A1E5WN82	A0A1E5UM64	Protein RRP6-like 3.	Exosome complex component RRP41-like.	0.966
BAE44_0006810	BAE44_0000122	A0A1E5W445	A0A1E5WN82	Exosome complex exonuclease RRP46-like protein.	Protein RRP6-like 3.	0.982
BAE44_0006810	BAE44_0009323	A0A1E5W445	A0A1E5VX37	Exosome complex exonuclease RRP46-like protein.	Uncharacterized protein.	0.998
BAE44_0006810	BAE44_0010156	A0A1E5W445	A0A1E5VUM5	Exosome complex exonuclease RRP46-like protein.	Exosome complex component RRP41-like protein.	0.990
BAE44_0006810	BAE44_0013776	A0A1E5W445	A0A1E5VJE5	Exosome complex exonuclease RRP46-like protein.	Protein RRP6-like 2.	0.979
BAE44_0006810	BAE44_0014846	A0A1E5W445	A0A1E5VG89	Exosome complex exonuclease RRP46-like protein.	HBS1-like protein.	0.989
BAE44_0006810	BAE44_0015276	A0A1E5W445	A0A1E5VEY0	Exosome complex exonuclease RRP46-like protein.	Exosome complex exonuclease RRP44-like protein A; Belongs to the RNR ribonuclease family.	0.978
BAE44_0006810	BAE44_0015465	A0A1E5W445	A0A1E5VEE2	Exosome complex exonuclease RRP46-like protein.	DExH-box ATP-dependent RNA helicase DExH10.	0.984
BAE44_0006810	BAE44_0022989	A0A1E5W445	A0A1E5USX8	Exosome complex exonuclease RRP46-like protein.	Exosome complex component RRP45B.	0.998
BAE44_0006810	BAE44_0023612	A0A1E5W445	A0A1E5UR46	Exosome complex exonuclease RRP46-like protein.	DExH-box ATP-dependent RNA helicase DExH9.	0.985
BAE44_0006810	BAE44_0025022	A0A1E5W445	A0A1E5UM64	Exosome complex exonuclease RRP46-like protein.	Exosome complex component RRP41-like.	0.989
BAE44_0009323	BAE44_0000122	A0A1E5VX37	A0A1E5WN82	Uncharacterized protein.	Protein RRP6-like 3.	0.981