BAE44_0008577 protein (Dichanthelium oligosanthes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAE44_0008577

tRNA pseudouridine synthase A, mitochondrial. (578 aa)

Predicted Functional Partners:

BAE44_0004239

0.937

BAE44_0011637

0.928

BAE44_0006046

0.905

BAE44_0004269

0.823

BAE44_0026110

0.817

BAE44_0021442

0.817

BAE44_0020511

0.817

BAE44_0015898

0.817

BAE44_0011142

0.817

BAE44_0006095

0.817

Your Current Organism:

Dichanthelium oligosanthes

NCBI taxonomy Id: 888268
Other names: D. oligosanthes, Dichanthelium oligosanthes (Schult.) Gould, Panicum oligosanthes, Panicum oligosanthes Schult.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAE44_0004239	BAE44_0004269	A0A1E5WBI0	A0A1E5WBG1	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Ribosome biogenesis protein WDR12-like protein.	0.865
BAE44_0004239	BAE44_0006095	A0A1E5WBI0	A0A1E5W668	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.517
BAE44_0004239	BAE44_0008577	A0A1E5WBI0	A0A1E5VZ56	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	tRNA pseudouridine synthase A, mitochondrial.	0.937
BAE44_0004239	BAE44_0011142	A0A1E5WBI0	A0A1E5VRT7	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.517
BAE44_0004239	BAE44_0015898	A0A1E5WBI0	A0A1E5VD62	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	H/ACA ribonucleoprotein complex subunit 4.	0.517
BAE44_0004239	BAE44_0020511	A0A1E5WBI0	A0A1E5V044	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	tRNA pseudouridine synthase B.	0.517
BAE44_0004239	BAE44_0021442	A0A1E5WBI0	A0A1E5UXF6	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	H/ACA ribonucleoprotein complex subunit 4.	0.517
BAE44_0004239	BAE44_0026110	A0A1E5WBI0	A0A1E5UJ07	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.517
BAE44_0004269	BAE44_0004239	A0A1E5WBG1	A0A1E5WBI0	Ribosome biogenesis protein WDR12-like protein.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.865
BAE44_0004269	BAE44_0006095	A0A1E5WBG1	A0A1E5W668	Ribosome biogenesis protein WDR12-like protein.	Uncharacterized protein.	0.781
BAE44_0004269	BAE44_0008577	A0A1E5WBG1	A0A1E5VZ56	Ribosome biogenesis protein WDR12-like protein.	tRNA pseudouridine synthase A, mitochondrial.	0.823
BAE44_0004269	BAE44_0011142	A0A1E5WBG1	A0A1E5VRT7	Ribosome biogenesis protein WDR12-like protein.	Uncharacterized protein.	0.781
BAE44_0004269	BAE44_0011637	A0A1E5WBG1	A0A1E5VQI7	Ribosome biogenesis protein WDR12-like protein.	DNA-directed RNA polymerases II, IV and V subunit 3.	0.538
BAE44_0004269	BAE44_0015898	A0A1E5WBG1	A0A1E5VD62	Ribosome biogenesis protein WDR12-like protein.	H/ACA ribonucleoprotein complex subunit 4.	0.781
BAE44_0004269	BAE44_0020511	A0A1E5WBG1	A0A1E5V044	Ribosome biogenesis protein WDR12-like protein.	tRNA pseudouridine synthase B.	0.781
BAE44_0004269	BAE44_0021442	A0A1E5WBG1	A0A1E5UXF6	Ribosome biogenesis protein WDR12-like protein.	H/ACA ribonucleoprotein complex subunit 4.	0.781
BAE44_0004269	BAE44_0026110	A0A1E5WBG1	A0A1E5UJ07	Ribosome biogenesis protein WDR12-like protein.	Uncharacterized protein.	0.781
BAE44_0006046	BAE44_0006095	A0A1E5W662	A0A1E5W668	50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.683
BAE44_0006046	BAE44_0008577	A0A1E5W662	A0A1E5VZ56	50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.	tRNA pseudouridine synthase A, mitochondrial.	0.905
BAE44_0006046	BAE44_0011142	A0A1E5W662	A0A1E5VRT7	50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.683