BAE44_0007474 protein (Dichanthelium oligosanthes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAE44_0007474

Uncharacterized protein. (484 aa)

Predicted Functional Partners:

BAE44_0017598

0.536

BAE44_0007521

0.528

BAE44_0022215

0.526

BAE44_0008752

0.522

BAE44_0017996

0.521

BAE44_0017992

0.513

BAE44_0017989

0.509

BAE44_0022631

0.507

BAE44_0019846

0.507

BAE44_0020148

0.506

Your Current Organism:

Dichanthelium oligosanthes

NCBI taxonomy Id: 888268
Other names: D. oligosanthes, Dichanthelium oligosanthes (Schult.) Gould, Panicum oligosanthes, Panicum oligosanthes Schult.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAE44_0007474	BAE44_0007521	A0A1E5W2F8	A0A1E5W289	Uncharacterized protein.	F-box domain-containing protein.	0.528
BAE44_0007474	BAE44_0008752	A0A1E5W2F8	A0A1E5VYS6	Uncharacterized protein.	NB-ARC domain-containing protein.	0.522
BAE44_0007474	BAE44_0017598	A0A1E5W2F8	A0A1E5V884	Uncharacterized protein.	F-box domain-containing protein.	0.536
BAE44_0007474	BAE44_0017989	A0A1E5W2F8	A0A1E5V7A1	Uncharacterized protein.	F-box domain-containing protein.	0.509
BAE44_0007474	BAE44_0017992	A0A1E5W2F8	A0A1E5V792	Uncharacterized protein.	Uncharacterized protein.	0.513
BAE44_0007474	BAE44_0017996	A0A1E5W2F8	A0A1E5V742	Uncharacterized protein.	F-box domain-containing protein.	0.521
BAE44_0007474	BAE44_0019846	A0A1E5W2F8	A0A1E5V260	Uncharacterized protein.	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.	0.507
BAE44_0007474	BAE44_0020148	A0A1E5W2F8	A0A1E5V1F0	Uncharacterized protein.	Putative disease resistance RPP13-like protein 2; Belongs to the disease resistance NB-LRR family.	0.506
BAE44_0007474	BAE44_0022215	A0A1E5W2F8	A0A1E5UVF0	Uncharacterized protein.	Apple domain-containing protein.	0.526
BAE44_0007474	BAE44_0022631	A0A1E5W2F8	A0A1E5UTW2	Uncharacterized protein.	NB-ARC domain-containing protein.	0.507
BAE44_0007521	BAE44_0007474	A0A1E5W289	A0A1E5W2F8	F-box domain-containing protein.	Uncharacterized protein.	0.528
BAE44_0007521	BAE44_0008752	A0A1E5W289	A0A1E5VYS6	F-box domain-containing protein.	NB-ARC domain-containing protein.	0.506
BAE44_0007521	BAE44_0019846	A0A1E5W289	A0A1E5V260	F-box domain-containing protein.	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.	0.461
BAE44_0007521	BAE44_0020148	A0A1E5W289	A0A1E5V1F0	F-box domain-containing protein.	Putative disease resistance RPP13-like protein 2; Belongs to the disease resistance NB-LRR family.	0.482
BAE44_0007521	BAE44_0022215	A0A1E5W289	A0A1E5UVF0	F-box domain-containing protein.	Apple domain-containing protein.	0.548
BAE44_0007521	BAE44_0022631	A0A1E5W289	A0A1E5UTW2	F-box domain-containing protein.	NB-ARC domain-containing protein.	0.479
BAE44_0008752	BAE44_0007474	A0A1E5VYS6	A0A1E5W2F8	NB-ARC domain-containing protein.	Uncharacterized protein.	0.522
BAE44_0008752	BAE44_0007521	A0A1E5VYS6	A0A1E5W289	NB-ARC domain-containing protein.	F-box domain-containing protein.	0.506
BAE44_0008752	BAE44_0017598	A0A1E5VYS6	A0A1E5V884	NB-ARC domain-containing protein.	F-box domain-containing protein.	0.531
BAE44_0008752	BAE44_0017989	A0A1E5VYS6	A0A1E5V7A1	NB-ARC domain-containing protein.	F-box domain-containing protein.	0.450