Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGJ39681.1 | EGJ42296.1 | HMPREF9389_1539 | HMPREF9389_0769 | MutG family lantibiotic protection ABC superfamily ATP binding cassette transporter permease subunit. | Thioredoxin family protein; COG: COG0526. | 0.999 |
EGJ39681.1 | gpxA | HMPREF9389_1539 | HMPREF9389_2031 | MutG family lantibiotic protection ABC superfamily ATP binding cassette transporter permease subunit. | Glutathione peroxidase; COG: COG0386; Belongs to the glutathione peroxidase family. | 0.911 |
EGJ42296.1 | EGJ39681.1 | HMPREF9389_0769 | HMPREF9389_1539 | Thioredoxin family protein; COG: COG0526. | MutG family lantibiotic protection ABC superfamily ATP binding cassette transporter permease subunit. | 0.999 |
EGJ42296.1 | acoL | HMPREF9389_0769 | HMPREF9389_1711 | Thioredoxin family protein; COG: COG0526. | Acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase; COG: COG1249. | 0.897 |
EGJ42296.1 | gor | HMPREF9389_0769 | HMPREF9389_2046 | Thioredoxin family protein; COG: COG0526. | Glutathione-disulfide reductase; COG: COG1249. | 0.843 |
EGJ42296.1 | gpxA | HMPREF9389_0769 | HMPREF9389_2031 | Thioredoxin family protein; COG: COG0526. | Glutathione peroxidase; COG: COG0386; Belongs to the glutathione peroxidase family. | 0.665 |
EGJ42296.1 | msrA | HMPREF9389_0769 | HMPREF9389_0908 | Thioredoxin family protein; COG: COG0526. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.999 |
EGJ42296.1 | msrA2 | HMPREF9389_0769 | HMPREF9389_1656 | Thioredoxin family protein; COG: COG0526. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.999 |
EGJ42296.1 | rpmC2 | HMPREF9389_0769 | HMPREF9389_1938 | Thioredoxin family protein; COG: COG0526. | 50S ribosomal protein L29; COG: COG0625. | 0.566 |
EGJ44006.1 | gpxA | HMPREF9389_0185 | HMPREF9389_2031 | Hypothetical protein. | Glutathione peroxidase; COG: COG0386; Belongs to the glutathione peroxidase family. | 0.751 |
EGJ44006.1 | msrA | HMPREF9389_0185 | HMPREF9389_0908 | Hypothetical protein. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.400 |
EGJ44006.1 | msrA2 | HMPREF9389_0185 | HMPREF9389_1656 | Hypothetical protein. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.400 |
EGJ44006.1 | nrdH | HMPREF9389_0185 | HMPREF9389_1322 | Hypothetical protein. | Glutaredoxin-like protein NrdH; COG: COG0695. | 0.770 |
EGJ44006.1 | rpmC2 | HMPREF9389_0185 | HMPREF9389_1938 | Hypothetical protein. | 50S ribosomal protein L29; COG: COG0625. | 0.714 |
acoL | EGJ42296.1 | HMPREF9389_1711 | HMPREF9389_0769 | Acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase; COG: COG1249. | Thioredoxin family protein; COG: COG0526. | 0.897 |
acoL | gor | HMPREF9389_1711 | HMPREF9389_2046 | Acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase; COG: COG1249. | Glutathione-disulfide reductase; COG: COG1249. | 0.915 |
acoL | gpxA | HMPREF9389_1711 | HMPREF9389_2031 | Acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase; COG: COG1249. | Glutathione peroxidase; COG: COG0386; Belongs to the glutathione peroxidase family. | 0.584 |
acoL | msrA | HMPREF9389_1711 | HMPREF9389_0908 | Acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase; COG: COG1249. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.672 |
acoL | msrA2 | HMPREF9389_1711 | HMPREF9389_1656 | Acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase; COG: COG1249. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.672 |
acoL | nrdH | HMPREF9389_1711 | HMPREF9389_1322 | Acetoin dehydrogenase E3 component, dihydrolipoamide dehydrogenase; COG: COG1249. | Glutaredoxin-like protein NrdH; COG: COG0695. | 0.853 |
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