APR81829.1 protein (Minicystis rosea) - STRING interaction network

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second shell of interactors

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

APR81829.1

Alpha-1,2-mannosidase. (227 aa)

Predicted Functional Partners:

APR81828.1

0.773

APR85008.1

0.621

APR77311.1

0.592

APR77312.1

0.566

APR80591.1

0.535

APR86312.1

0.535

APR81826.1

0.518

APR86313.1

0.515

APR81827.1

0.514

APR78955.1

0.512

Your Current Organism:

Minicystis rosea

NCBI taxonomy Id: 888845
Other names: DSM 24000, M. rosea, Minicystis rosea Garcia et al. 2014, NCCB 100349, Sorangiineae bacterium SBNa008, strain SBNa008

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APR77311.1	APR77312.1	A7982_02658	A7982_02659	Cellulose-binding domain protein.	Hypothetical protein.	0.948
APR77311.1	APR81829.1	A7982_02658	A7982_07178	Cellulose-binding domain protein.	Alpha-1,2-mannosidase.	0.592
APR77311.1	APR86313.1	A7982_02658	A7982_11662	Cellulose-binding domain protein.	Hypothetical protein.	0.781
APR77312.1	APR77311.1	A7982_02659	A7982_02658	Hypothetical protein.	Cellulose-binding domain protein.	0.948
APR77312.1	APR78955.1	A7982_02659	A7982_04302	Hypothetical protein.	Cellulose-binding domain protein.	0.780
APR77312.1	APR80591.1	A7982_02659	A7982_05938	Hypothetical protein.	Cellulose-binding domain protein.	0.777
APR77312.1	APR81829.1	A7982_02659	A7982_07178	Hypothetical protein.	Alpha-1,2-mannosidase.	0.566
APR77312.1	APR85008.1	A7982_02659	A7982_10357	Hypothetical protein.	Hypothetical protein.	0.782
APR77312.1	APR86312.1	A7982_02659	A7982_11661	Hypothetical protein.	Hypothetical protein.	0.780
APR78955.1	APR77312.1	A7982_04302	A7982_02659	Cellulose-binding domain protein.	Hypothetical protein.	0.780
APR78955.1	APR81829.1	A7982_04302	A7982_07178	Cellulose-binding domain protein.	Alpha-1,2-mannosidase.	0.512
APR78955.1	APR86313.1	A7982_04302	A7982_11662	Cellulose-binding domain protein.	Hypothetical protein.	0.781
APR80591.1	APR77312.1	A7982_05938	A7982_02659	Cellulose-binding domain protein.	Hypothetical protein.	0.777
APR80591.1	APR81829.1	A7982_05938	A7982_07178	Cellulose-binding domain protein.	Alpha-1,2-mannosidase.	0.535
APR80591.1	APR86313.1	A7982_05938	A7982_11662	Cellulose-binding domain protein.	Hypothetical protein.	0.775
APR81826.1	APR81827.1	A7982_07175	A7982_07176	Hypothetical protein.	Hypothetical protein.	0.806
APR81826.1	APR81828.1	A7982_07175	A7982_07177	Hypothetical protein.	Hypothetical protein.	0.545
APR81826.1	APR81829.1	A7982_07175	A7982_07178	Hypothetical protein.	Alpha-1,2-mannosidase.	0.518
APR81827.1	APR81826.1	A7982_07176	A7982_07175	Hypothetical protein.	Hypothetical protein.	0.806
APR81827.1	APR81828.1	A7982_07176	A7982_07177	Hypothetical protein.	Hypothetical protein.	0.514

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

25

average node degree:

4.55

avg. local clustering coefficient:

0.864

expected number of edges:

16

PPI enrichment p-value:

0.0281

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006259

DNA metabolic process

6 of 341

1.14

0.82

0.0056

GO:0006289

Nucleotide-excision repair

3 of 40

1.77

0.77

0.0322

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003712

Transcription coregulator activity

4 of 63

1.69

1.33

0.0015

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030894

Replisome

3 of 11

2.33

1.92

0.00023

GO:0016592

Mediator complex

3 of 20

2.07

1.6

0.00075

GO:0005662

DNA replication factor A complex

2 of 2

2.89

1.51

0.0018

GO:0140513

Nuclear protein-containing complex

6 of 587

0.9

0.67

0.0043

GO:0005634

Nucleus

11 of 2090

0.61

0.53

0.00015

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:8509

Mediator complex

3 of 10

2.37

1.7

0.00067

CL:6882

HDR through Single Strand Annealing (SSA), and Endodeoxyribonuclease activity

3 of 13

2.25

1.67

0.00067

CL:6885

DNA replication factor A complex, and DNA recombinase assembly

2 of 5

2.49

1.33

0.0036

CL:6873

DNA replication, and DNA Double-Strand Break Repair

4 of 140

1.35

1.02

0.0031

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03420

Nucleotide excision repair

3 of 72

1.51

0.86

0.0152

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005662

DNA replication factor A complex

2 of 3

2.72

1.18

0.0072

GOCC:0005634

Nucleus

10 of 1209

0.81

0.76

2.99e-05

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0010

Activator

3 of 18

2.11

1.71

0.00048

KW-0539

Nucleus

5 of 289

1.13

0.91

0.0021

KW-0805

Transcription regulation

3 of 82

1.45

0.89

0.0113

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01336

OB-fold nucleic acid binding domain

2 of 7

2.35

0.73

0.0469

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