STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APR82496.1Vancomycin B-type resistance protein VanW. (563 aa)    
Predicted Functional Partners:
APR77623.1
Hypothetical protein.
 
     0.688
APR83829.1
Hypothetical protein.
  
     0.604
APR87729.1
Hypothetical protein.
  
     0.549
APR82072.1
General secretion pathway protein N.
  
     0.545
APR83534.1
Lycopene beta cyclase.
  
     0.527
APR87097.1
FHA/TonB domain protein.
  
     0.519
APR79423.1
Helicase, SNF2/RAD54 family protein.
  
     0.499
APR79575.1
RNA-binding protein Jag.
 
     0.485
APR82497.1
Hypothetical protein.
       0.478
APR76376.1
Hypothetical protein.
  
     0.471
Your Current Organism:
Minicystis rosea
NCBI taxonomy Id: 888845
Other names: DSM 24000, M. rosea, Minicystis rosea Garcia et al. 2014, NCCB 100349, Sorangiineae bacterium SBNa008, strain SBNa008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.