Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APR84148.1 | APR86504.1 | A7982_09497 | A7982_11853 | SSU ribosomal protein S14p. | ATPase components of ABC transporters with duplicated ATPase. | 0.746 |
| APR84148.1 | rplA | A7982_09497 | A7982_11232 | SSU ribosomal protein S14p. | LSU ribosomal protein L1p; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.997 |
| APR84148.1 | rplB | A7982_09497 | A7982_07826 | SSU ribosomal protein S14p. | LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.997 |
| APR84148.1 | rplD | A7982_09497 | A7982_07828 | SSU ribosomal protein S14p. | LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel. | 0.998 |
| APR84148.1 | rplE | A7982_09497 | A7982_09496 | SSU ribosomal protein S14p. | LSU ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
| APR84148.1 | rplN | A7982_09497 | A7982_09494 | SSU ribosomal protein S14p. | LSU ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| APR84148.1 | rpsE | A7982_09497 | A7982_09501 | SSU ribosomal protein S14p. | SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| APR84148.1 | rpsG | A7982_09497 | A7982_07832 | SSU ribosomal protein S14p. | SSU ribosomal protein S7p (S5e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
| APR84148.1 | rpsL | A7982_09497 | A7982_07833 | SSU ribosomal protein S14p. | SSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
| APR84148.1 | rpsM | A7982_09497 | A7982_09508 | SSU ribosomal protein S14p. | SSU ribosomal protein S13p (S18e); Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
| APR86504.1 | APR84148.1 | A7982_11853 | A7982_09497 | ATPase components of ABC transporters with duplicated ATPase. | SSU ribosomal protein S14p. | 0.746 |
| APR86504.1 | rplA | A7982_11853 | A7982_11232 | ATPase components of ABC transporters with duplicated ATPase. | LSU ribosomal protein L1p; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.749 |
| APR86504.1 | rplB | A7982_11853 | A7982_07826 | ATPase components of ABC transporters with duplicated ATPase. | LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.781 |
| APR86504.1 | rplD | A7982_11853 | A7982_07828 | ATPase components of ABC transporters with duplicated ATPase. | LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel. | 0.731 |
| APR86504.1 | rplE | A7982_11853 | A7982_09496 | ATPase components of ABC transporters with duplicated ATPase. | LSU ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.758 |
| APR86504.1 | rplN | A7982_11853 | A7982_09494 | ATPase components of ABC transporters with duplicated ATPase. | LSU ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.758 |
| APR86504.1 | rpsE | A7982_11853 | A7982_09501 | ATPase components of ABC transporters with duplicated ATPase. | SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.731 |
| APR86504.1 | rpsG | A7982_11853 | A7982_07832 | ATPase components of ABC transporters with duplicated ATPase. | SSU ribosomal protein S7p (S5e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.747 |
| APR86504.1 | rpsL | A7982_11853 | A7982_07833 | ATPase components of ABC transporters with duplicated ATPase. | SSU ribosomal protein S12p (S23e); Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.760 |
| APR86504.1 | rpsM | A7982_11853 | A7982_09508 | ATPase components of ABC transporters with duplicated ATPase. | SSU ribosomal protein S13p (S18e); Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.734 |
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