APR88145.1 protein (Minicystis rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APR88145.1

RNA polymerase sigma-70 factor, ECF subfamily protein. (255 aa)

Predicted Functional Partners:

APR88144.1

0.714

APR76022.1

0.599

APR79619.1

0.485

APR81890.1

0.430

APR85800.1

0.430

APR77082.1

0.428

APR75245.1

0.422

APR88143.1

0.417

APR86434.1

0.411

Your Current Organism:

Minicystis rosea

NCBI taxonomy Id: 888845
Other names: DSM 24000, M. rosea, Minicystis rosea Garcia et al. 2014, NCCB 100349, Sorangiineae bacterium SBNa008, strain SBNa008

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APR75245.1	APR88145.1	A7982_00591	A7982_13494	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.422
APR76022.1	APR88145.1	A7982_01369	A7982_13494	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.599
APR77082.1	APR88145.1	A7982_02429	A7982_13494	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.428
APR79619.1	APR88145.1	A7982_04966	A7982_13494	RNA polymerase sigma-70 factor.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.485
APR81890.1	APR88145.1	A7982_07239	A7982_13494	Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.430
APR85800.1	APR88145.1	A7982_11149	A7982_13494	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.430
APR86434.1	APR88145.1	A7982_11783	A7982_13494	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.411
APR88143.1	APR88144.1	A7982_13492	A7982_13493	BNR repeat domain protein.	Haloalkane dehalogenase 2.	0.494
APR88143.1	APR88145.1	A7982_13492	A7982_13494	BNR repeat domain protein.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.417
APR88144.1	APR88143.1	A7982_13493	A7982_13492	Haloalkane dehalogenase 2.	BNR repeat domain protein.	0.494
APR88144.1	APR88145.1	A7982_13493	A7982_13494	Haloalkane dehalogenase 2.	RNA polymerase sigma-70 factor, ECF subfamily protein.	0.714
APR88145.1	APR75245.1	A7982_13494	A7982_00591	RNA polymerase sigma-70 factor, ECF subfamily protein.	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.422
APR88145.1	APR76022.1	A7982_13494	A7982_01369	RNA polymerase sigma-70 factor, ECF subfamily protein.	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.599
APR88145.1	APR77082.1	A7982_13494	A7982_02429	RNA polymerase sigma-70 factor, ECF subfamily protein.	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.428
APR88145.1	APR79619.1	A7982_13494	A7982_04966	RNA polymerase sigma-70 factor, ECF subfamily protein.	RNA polymerase sigma-70 factor.	0.485
APR88145.1	APR81890.1	A7982_13494	A7982_07239	RNA polymerase sigma-70 factor, ECF subfamily protein.	Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.	0.430
APR88145.1	APR85800.1	A7982_13494	A7982_11149	RNA polymerase sigma-70 factor, ECF subfamily protein.	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.430
APR88145.1	APR86434.1	A7982_13494	A7982_11783	RNA polymerase sigma-70 factor, ECF subfamily protein.	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.411
APR88145.1	APR88143.1	A7982_13494	A7982_13492	RNA polymerase sigma-70 factor, ECF subfamily protein.	BNR repeat domain protein.	0.417
APR88145.1	APR88144.1	A7982_13494	A7982_13493	RNA polymerase sigma-70 factor, ECF subfamily protein.	Haloalkane dehalogenase 2.	0.714