STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFG36485.1PFAM: Predicted permease. (461 aa)    
Predicted Functional Partners:
AFG36486.1
Putative transcriptional regulator.
  
  
 0.801
AFG36487.1
Putative glycosyltransferase; PFAM: PilZ domain.
  
  
 0.523
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.501
AFG37374.1
Putative transporter component; PFAM: YeeE/YedE family (DUF395).
  
     0.433
AFG37423.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
  
    0.428
AFG36612.1
PFAM: Cytochrome C biogenesis protein transmembrane region.
 
    0.425
Your Current Organism:
Spirochaeta africana
NCBI taxonomy Id: 889378
Other names: S. africana DSM 8902, Spirochaeta africana DSM 8902, Spirochaeta africana Z-7692, Spirochaeta africana str. DSM 8902, Spirochaeta africana strain DSM 8902
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