STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFG36540.1Hypothetical protein. (158 aa)    
Predicted Functional Partners:
AFG36541.1
Nucleotidyltransferase family protein; PFAM: Nucleotidyltransferase domain.
 
     0.949
vapC-2
Putative nucleic acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.634
AFG36543.1
Hypothetical protein.
       0.556
AFG36151.1
PFAM: Nucleotidyltransferase substrate binding protein like; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family.
 
     0.472
AFG37099.1
Hypothetical protein.
  
     0.454
AFG37101.1
Hypothetical protein.
  
     0.453
mnmA
Putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase with PP-loop ATPase domain; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.412
AFG36152.1
PFAM: Nucleotidyltransferase domain.
 
     0.411
Your Current Organism:
Spirochaeta africana
NCBI taxonomy Id: 889378
Other names: S. africana DSM 8902, Spirochaeta africana DSM 8902, Spirochaeta africana Z-7692, Spirochaeta africana str. DSM 8902, Spirochaeta africana strain DSM 8902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.