Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFG37143.1 | AFG37144.1 | Spiaf_1056 | Spiaf_1057 | PFAM: Response regulator receiver domain. | Hypothetical protein. | 0.780 |
AFG37143.1 | AFG37146.1 | Spiaf_1056 | Spiaf_1059 | PFAM: Response regulator receiver domain. | Hypothetical protein. | 0.737 |
AFG37143.1 | AFG37147.1 | Spiaf_1056 | Spiaf_1060 | PFAM: Response regulator receiver domain. | ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family. | 0.764 |
AFG37143.1 | AFG37149.1 | Spiaf_1056 | Spiaf_1062 | PFAM: Response regulator receiver domain. | ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease. | 0.755 |
AFG37143.1 | AFG37150.1 | Spiaf_1056 | Spiaf_1063 | PFAM: Response regulator receiver domain. | Arginine kinase. | 0.694 |
AFG37143.1 | AFG37151.1 | Spiaf_1056 | Spiaf_1064 | PFAM: Response regulator receiver domain. | ATPase with chaperone activity, ATP-binding subunit; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; UvrB/uvrC motif; ATPase family associated with various cellular activities (AAA); Belongs to the ClpA/ClpB family. | 0.733 |
AFG37143.1 | AFG37152.1 | Spiaf_1056 | Spiaf_1065 | PFAM: Response regulator receiver domain. | Putative dehydrogenase; PFAM: BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase. | 0.680 |
AFG37143.1 | ftsY | Spiaf_1056 | Spiaf_1058 | PFAM: Response regulator receiver domain. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.770 |
AFG37143.1 | lolD | Spiaf_1056 | Spiaf_1061 | PFAM: Response regulator receiver domain. | ABC-type antimicrobial peptide transport system, ATPase component; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. | 0.755 |
AFG37143.1 | prfB | Spiaf_1056 | Spiaf_1055 | PFAM: Response regulator receiver domain. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.716 |
AFG37144.1 | AFG37143.1 | Spiaf_1057 | Spiaf_1056 | Hypothetical protein. | PFAM: Response regulator receiver domain. | 0.780 |
AFG37144.1 | AFG37146.1 | Spiaf_1057 | Spiaf_1059 | Hypothetical protein. | Hypothetical protein. | 0.737 |
AFG37144.1 | AFG37147.1 | Spiaf_1057 | Spiaf_1060 | Hypothetical protein. | ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family. | 0.768 |
AFG37144.1 | AFG37149.1 | Spiaf_1057 | Spiaf_1062 | Hypothetical protein. | ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease. | 0.768 |
AFG37144.1 | AFG37150.1 | Spiaf_1057 | Spiaf_1063 | Hypothetical protein. | Arginine kinase. | 0.701 |
AFG37144.1 | AFG37151.1 | Spiaf_1057 | Spiaf_1064 | Hypothetical protein. | ATPase with chaperone activity, ATP-binding subunit; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; UvrB/uvrC motif; ATPase family associated with various cellular activities (AAA); Belongs to the ClpA/ClpB family. | 0.695 |
AFG37144.1 | AFG37152.1 | Spiaf_1057 | Spiaf_1065 | Hypothetical protein. | Putative dehydrogenase; PFAM: BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase. | 0.680 |
AFG37144.1 | ftsY | Spiaf_1057 | Spiaf_1058 | Hypothetical protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.768 |
AFG37144.1 | lolD | Spiaf_1057 | Spiaf_1061 | Hypothetical protein. | ABC-type antimicrobial peptide transport system, ATPase component; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. | 0.768 |
AFG37144.1 | prfB | Spiaf_1057 | Spiaf_1055 | Hypothetical protein. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.707 |
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