STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFG37619.1Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (404 aa)    
Predicted Functional Partners:
AFG38863.1
PFAM: Bacterial regulatory proteins, tetR family.
  
   
 0.768
AFG38620.1
Hypothetical protein.
  
     0.729
AFG37516.1
PFAM: FecR protein.
  
     0.714
AFG37126.1
HEAT repeat-containing protein.
  
   
 0.702
AFG38069.1
PFAM: Protein of unknown function (DUF1570).
  
     0.689
AFG37517.1
Hypothetical protein.
  
     0.674
AFG38019.1
Hypothetical protein.
  
     0.660
trpF
PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate (PRA) isomerase; Belongs to the TrpF family.
 
  
 0.660
AFG37917.1
Parvulin-like peptidyl-prolyl isomerase; PFAM: PPIC-type PPIASE domain.
  
   
 0.643
AFG38517.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: IPT/TIG domain; Transglutaminase-like superfamily.
  
     0.639
Your Current Organism:
Spirochaeta africana
NCBI taxonomy Id: 889378
Other names: S. africana DSM 8902, Spirochaeta africana DSM 8902, Spirochaeta africana Z-7692, Spirochaeta africana str. DSM 8902, Spirochaeta africana strain DSM 8902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.