Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFG37875.1 | AFG37876.1 | Spiaf_1818 | Spiaf_1819 | Hypothetical protein. | Hypothetical protein. | 0.704 |
AFG37875.1 | AFG37877.1 | Spiaf_1818 | Spiaf_1820 | Hypothetical protein. | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | 0.691 |
AFG37875.1 | AFG37878.1 | Spiaf_1818 | Spiaf_1821 | Hypothetical protein. | Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | 0.605 |
AFG37875.1 | rplC | Spiaf_1818 | Spiaf_0554 | Hypothetical protein. | 50S ribosomal protein L3, bacterial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.410 |
AFG37875.1 | rplD | Spiaf_1818 | Spiaf_0555 | Hypothetical protein. | 50S ribosomal protein L4, bacterial/organelle; Forms part of the polypeptide exit tunnel. | 0.420 |
AFG37875.1 | rplM | Spiaf_1818 | Spiaf_0665 | Hypothetical protein. | Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.463 |
AFG37875.1 | rplU | Spiaf_1818 | Spiaf_1885 | Hypothetical protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.409 |
AFG37875.1 | rpsD | Spiaf_1818 | Spiaf_1720 | Hypothetical protein. | Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.444 |
AFG37876.1 | AFG37875.1 | Spiaf_1819 | Spiaf_1818 | Hypothetical protein. | Hypothetical protein. | 0.704 |
AFG37876.1 | AFG37877.1 | Spiaf_1819 | Spiaf_1820 | Hypothetical protein. | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | 0.809 |
AFG37876.1 | AFG37878.1 | Spiaf_1819 | Spiaf_1821 | Hypothetical protein. | Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | 0.695 |
AFG37877.1 | AFG37875.1 | Spiaf_1820 | Spiaf_1818 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | Hypothetical protein. | 0.691 |
AFG37877.1 | AFG37876.1 | Spiaf_1820 | Spiaf_1819 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | Hypothetical protein. | 0.809 |
AFG37877.1 | AFG37878.1 | Spiaf_1820 | Spiaf_1821 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | 0.700 |
AFG37877.1 | rplC | Spiaf_1820 | Spiaf_0554 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | 50S ribosomal protein L3, bacterial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.653 |
AFG37877.1 | rplD | Spiaf_1820 | Spiaf_0555 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | 50S ribosomal protein L4, bacterial/organelle; Forms part of the polypeptide exit tunnel. | 0.666 |
AFG37877.1 | rplM | Spiaf_1820 | Spiaf_0665 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.659 |
AFG37877.1 | rplU | Spiaf_1820 | Spiaf_1885 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.669 |
AFG37877.1 | rpsC | Spiaf_1820 | Spiaf_0560 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | Ribosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.648 |
AFG37877.1 | rpsD | Spiaf_1820 | Spiaf_1720 | ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter. | Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.649 |
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