STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFG38236.1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
AFG38237.1
Integral membrane protein CcmA involved in cell shape determination; PFAM: Protein of unknown function, DUF583.
       0.807
AFG38269.1
Putative transcriptional regulator; PFAM: Bacterial transcriptional activator domain.
 
   
 0.773
AFG37692.1
Tfp pilus assembly protein PilF; PFAM: Coatomer epsilon subunit.
 
   
 0.751
AFG37514.1
Putative N-acetylglucosaminyl transferase; PFAM: Tetratricopeptide repeat.
 
   
 0.745
AFG38686.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat.
 
   
 0.740
AFG38190.1
PFAM: Tetratricopeptide repeat.
 
   
 0.719
AFG37240.1
PFAM: Tetratricopeptide repeat.
 
   
 0.712
AFG38238.1
PFAM: Prephenate dehydrogenase.
       0.700
AFG37512.1
PFAM: Restriction endonuclease; Tetratricopeptide repeat.
 
   
 0.681
AFG37588.1
PFAM: PBS lyase HEAT-like repeat.
 
     0.640
Your Current Organism:
Spirochaeta africana
NCBI taxonomy Id: 889378
Other names: S. africana DSM 8902, Spirochaeta africana DSM 8902, Spirochaeta africana Z-7692, Spirochaeta africana str. DSM 8902, Spirochaeta africana strain DSM 8902
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