STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFG38372.1Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family. (212 aa)    
Predicted Functional Partners:
AFG38370.1
PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.971
AFG38374.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
 
 
 0.969
AFG38371.1
PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.956
AFG38369.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
 
 0.955
AFG38016.1
PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.945
AFG38698.1
ABC-type (unclassified) transport system, ATPase component; PFAM: ABC transporter.
 
   
 0.781
AFG36847.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
 
 0.746
AFG38015.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
 
 0.746
AFG37591.1
PFAM: Predicted permease YjgP/YjgQ family.
  
     0.735
AFG37592.1
PFAM: Predicted permease YjgP/YjgQ family.
  
     0.722
Your Current Organism:
Spirochaeta africana
NCBI taxonomy Id: 889378
Other names: S. africana DSM 8902, Spirochaeta africana DSM 8902, Spirochaeta africana Z-7692, Spirochaeta africana str. DSM 8902, Spirochaeta africana strain DSM 8902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.