STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFG38637.1PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: ABC transporter periplasmic binding protein, thiB subfamily. (348 aa)    
Predicted Functional Partners:
AFG38636.1
ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.994
AFG38635.1
ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain.
 
   
 0.842
AFG38395.1
ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.647
AFG37345.1
Hypothetical protein.
  
     0.500
AFG37510.1
Hypothetical protein.
  
     0.429
AFG37794.1
PFAM: ParB-like nuclease domain.
  
     0.428
AFG38638.1
PFAM: Adenylate and Guanylate cyclase catalytic domain; manually curated.
       0.414
Your Current Organism:
Spirochaeta africana
NCBI taxonomy Id: 889378
Other names: S. africana DSM 8902, Spirochaeta africana DSM 8902, Spirochaeta africana Z-7692, Spirochaeta africana str. DSM 8902, Spirochaeta africana strain DSM 8902
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