STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFG38734.1PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (422 aa)    
Predicted Functional Partners:
AFG36827.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
 0.860
AFG37403.1
PFAM: EAL domain; Domain of unknown function (DUF3369); GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.855
AFG38206.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.844
AFG38555.1
EAL domain-containing protein; PFAM: EAL domain.
  
 0.826
AFG37281.1
EAL domain-containing protein; PFAM: EAL domain.
 
  
 0.825
AFG37078.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
 0.823
AFG37191.1
PFAM: EAL domain; Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 0.797
AFG38736.1
PFAM: Domain of unknown function (DUF1987).
  
   0.787
AFG36455.1
Response regulator containing a CheY-like receiver domain and an HD-GYP domain; PFAM: HD domain.
  
 0.743
AFG37297.1
HD-GYP domain-containing protein; PFAM: HD domain.
 
 
 0.687
Your Current Organism:
Spirochaeta africana
NCBI taxonomy Id: 889378
Other names: S. africana DSM 8902, Spirochaeta africana DSM 8902, Spirochaeta africana Z-7692, Spirochaeta africana str. DSM 8902, Spirochaeta africana strain DSM 8902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.