STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC09556.1Nitroreductase; Belongs to the flavin oxidoreductase frp family. (260 aa)    
Predicted Functional Partners:
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
 0.672
SKB81357.1
ABC-type multidrug transport system, ATPase component.
 
  
 0.606
SKC09546.1
Trk system potassium uptake protein TrkA.
  
    0.508
SKC09523.1
Potassium uptake protein, TrkH family.
       0.507
SKC16646.1
fatty-acyl-CoA synthase.
   
   0.415
SKC23475.1
O-succinylbenzoic acid--CoA ligase.
   
   0.415
Your Current Organism:
Alkalitalea saponilacus
NCBI taxonomy Id: 889453
Other names: A. saponilacus, ATCC BAA-2172, Alkalitalea saponilacus Zhao and Chen 2012, Bacteroidales bacterium SC/BZ-SP2, DSM 24412, strain SC/BZ-SP2
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