STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ51015.1ABC-2 type transport system ATP-binding protein. (243 aa)    
Predicted Functional Partners:
SDJ64275.1
ABC-2 type transport system permease protein.
 
 0.735
SDJ51037.1
Hypothetical protein.
       0.733
SDJ30295.1
ABC-2 type transport system permease protein.
  
 0.686
SDJ30315.1
ABC-2 type transport system permease protein.
  
 0.686
SDJ89086.1
ABC-2 type transport system permease protein.
 
 
 0.617
thrS
threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.613
SDJ51049.1
Haloacid Dehalogenase Superfamily Class (subfamily) IIA.
       0.575
SDJ52292.1
ATP-binding cassette, subfamily B.
  
0.559
SDJ23073.1
ATP-binding cassette, subfamily B.
  
0.557
SDJ43457.1
ABC-2 type transport system permease protein.
 
 
 0.541
Your Current Organism:
Halovenus aranensis
NCBI taxonomy Id: 890420
Other names: CGMCC 1.11001, H. aranensis, Halobacteriaceae archaeon EB27, Halovenus aranensis Makhdoumi-Kakhki et al. 2012, IBRC-M 10015, strain EB27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.