STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ97777.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
SDJ74644.1
dITPase.
  
  
 0.807
SDJ97795.1
Predicted nucleic acid-binding protein, contains Zn-finger domain.
       0.671
SDJ20194.1
Hypothetical protein.
  
     0.633
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
     0.613
SDJ41646.1
Replicative DNA helicase Mcm.
       0.588
SDJ67853.1
Hypothetical protein.
  
 
 
 0.444
SDJ73233.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
 
     0.432
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
 
   0.421
SDJ97715.1
Polyhydroxyalkanoate synthase.
       0.405
lig
DNA ligase-1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
  
 
 
 0.400
Your Current Organism:
Halovenus aranensis
NCBI taxonomy Id: 890420
Other names: CGMCC 1.11001, H. aranensis, Halobacteriaceae archaeon EB27, Halovenus aranensis Makhdoumi-Kakhki et al. 2012, IBRC-M 10015, strain EB27
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.