Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SFV39430.1Transcriptional regulator, GntR family. (233 aa)    
Predicted Functional Partners:
SFV41765.1
Transcriptional regulator, GntR family.
  
     0.774
SFV41698.1
Transcriptional regulator, GntR family.
  
     0.773
SFV41198.1
Transcriptional regulator, GntR family.
  
     0.771
SFV39593.1
Transcriptional regulator, GntR family.
  
     0.770
SFV39877.1
Trehalose operon transcriptional repressor.
  
     0.763
SFV39433.1
PTS system, galactosamine-specific IIC component.
 
    0.673
SFV39960.1
PTS system, sucrose-specific IIB component / PTS system, sucrose-specific IIC component.
  
  
 0.640
SFV39434.1
PTS system, mannose-specific IID component.
 
    0.608
SFV39437.1
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.587
SFV39432.1
PTS system, mannose-specific IIB component.
 
    0.579
Your Current Organism:
Lactobacillus acidipiscis
NCBI taxonomy Id: 89059
Other names: CCUG 42961 [[Lactobacillus cypricasei]], CCUG 46556, CIP 106393 [[Lactobacillus cypricasei]], CIP 106750, DSM 15353 [[Lactobacillus cypricasei]], DSM 15836, JCM 10692, KCTC 13900 [[Lactobacillus cypricasei]], L. acidipiscis, Lactobacillus acidipiscis Tanasupawat et al. 2000, Lactobacillus cypricasei, Lactobacillus cypricasei Lawson et al. 2001, Lactobacillus sp. FS60-1, Lactobacillus sp. FS60-1T, Lactobacillus sp. LMG 17676, Lactobacillus sp. LMK3, NBRC 102163, NRIC 0300, PCU 207, PCU:207, strain FS60-1, strain LMK3 [[Lactobacillus cypricasei]]
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