STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV39431.1Beta-galactosidase 3; Belongs to the glycosyl hydrolase 35 family. (587 aa)    
Predicted Functional Partners:
SFV39970.1
Alpha-galactosidase.
 
  
 0.936
galM_2
Aldose 1-epimerase; Catalyzes the interconversion of alpha and beta anomers of maltose.
  
 
 0.919
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
 
      0.848
SFV39433.1
PTS system, galactosamine-specific IIC component.
 
   
 0.846
SFV39434.1
PTS system, mannose-specific IID component.
 
   
 0.812
SFV39432.1
PTS system, mannose-specific IIB component.
 
   
 0.790
SFV39436.1
Galactosamine-6-phosphate isomerase.
 
   
 0.746
SFV39435.1
PTS system, galactosamine-specific IIA component.
     
 0.591
SFV39430.1
Transcriptional regulator, GntR family.
       0.535
SFV39437.1
N-acetylglucosamine-6-phosphate deacetylase.
     
 0.529
Your Current Organism:
Lactobacillus acidipiscis
NCBI taxonomy Id: 89059
Other names: CCUG 42961 [[Lactobacillus cypricasei]], CCUG 46556, CIP 106393 [[Lactobacillus cypricasei]], CIP 106750, DSM 15353 [[Lactobacillus cypricasei]], DSM 15836, JCM 10692, KCTC 13900 [[Lactobacillus cypricasei]], L. acidipiscis, Lactobacillus acidipiscis Tanasupawat et al. 2000, Lactobacillus cypricasei, Lactobacillus cypricasei Lawson et al. 2001, Lactobacillus sp. FS60-1, Lactobacillus sp. FS60-1T, Lactobacillus sp. LMG 17676, Lactobacillus sp. LMK3, NBRC 102163, NRIC 0300, PCU 207, PCU:207, strain FS60-1, strain LMK3 [[Lactobacillus cypricasei]]
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