Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFV40657.1Transcriptional regulator, MarR family. (142 aa)    
Predicted Functional Partners:
SFV41357.1
Transcriptional regulator.
  
 
 0.764
SFV40739.1
FIG00752829: hypothetical protein.
  
     0.715
SFV40740.1
FIG00749923: hypothetical protein.
  
     0.711
SFV40656.1
DegV family protein.
       0.681
SFV40658.1
Fibronectin-binding protein.
       0.649
SFV40219.1
FIG015094: hypothetical protein.
  
    0.628
SFV41251.1
Hypothetical protein.
  
     0.623
SFV40230.1
Ribosomal-protein-S18p-alanine acetyltransferase.
  
     0.617
SFV40738.1
Hypothetical protein.
  
     0.617
SFV40680.1
Hypothetical protein.
  
     0.581
Your Current Organism:
Lactobacillus acidipiscis
NCBI taxonomy Id: 89059
Other names: CCUG 42961 [[Lactobacillus cypricasei]], CCUG 46556, CIP 106393 [[Lactobacillus cypricasei]], CIP 106750, DSM 15353 [[Lactobacillus cypricasei]], DSM 15836, JCM 10692, KCTC 13900 [[Lactobacillus cypricasei]], L. acidipiscis, Lactobacillus acidipiscis Tanasupawat et al. 2000, Lactobacillus cypricasei, Lactobacillus cypricasei Lawson et al. 2001, Lactobacillus sp. FS60-1, Lactobacillus sp. FS60-1T, Lactobacillus sp. LMG 17676, Lactobacillus sp. LMK3, NBRC 102163, NRIC 0300, PCU 207, PCU:207, strain FS60-1, strain LMK3 [[Lactobacillus cypricasei]]
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