STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV41423.1Galactofuranose transferase. (333 aa)    
Predicted Functional Partners:
SFV41426.1
Glycosyltransferase.
 
    0.859
SFV41419.1
Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids.
 
  
 0.858
SFV41418.1
Hypothetical protein.
 
     0.835
SFV41422.1
Putative mannosyltransferase involved in polysaccharide biosynthesis.
 
  
 0.823
SFV41417.1
Hypothetical protein.
 
     0.794
SFV41420.1
UDP-galactopyranose mutase.
 
  
 0.750
SFV41424.1
Glycosyl transferase group 1.
      0.693
SFV41038.1
FIG00749603: hypothetical protein.
  
     0.633
SFV40837.1
FIG00749076: hypothetical protein.
  
     0.606
SFV41425.1
Lipopolysaccharide cholinephosphotransferase LicD1.
 
     0.578
Your Current Organism:
Lactobacillus acidipiscis
NCBI taxonomy Id: 89059
Other names: CCUG 42961 [[Lactobacillus cypricasei]], CCUG 46556, CIP 106393 [[Lactobacillus cypricasei]], CIP 106750, DSM 15353 [[Lactobacillus cypricasei]], DSM 15836, JCM 10692, KCTC 13900 [[Lactobacillus cypricasei]], L. acidipiscis, Lactobacillus acidipiscis Tanasupawat et al. 2000, Lactobacillus cypricasei, Lactobacillus cypricasei Lawson et al. 2001, Lactobacillus sp. FS60-1, Lactobacillus sp. FS60-1T, Lactobacillus sp. LMG 17676, Lactobacillus sp. LMK3, NBRC 102163, NRIC 0300, PCU 207, PCU:207, strain FS60-1, strain LMK3 [[Lactobacillus cypricasei]]
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