STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAC1533_2247Glycine betaine ABC transport system, ATP-binding protein OpuAA. (397 aa)    
Predicted Functional Partners:
SFV41366.1
Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC.
 
 0.992
SFV41669.1
Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC.
 
 0.992
SFV39664.1
Glycine betaine ABC transport system, ATP-binding protein OpuAA.
  
  
 
0.900
SFV39725.1
ABC transporter, ATP-binding and permease protein.
 
     
0.836
SFV41241.1
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1).
 
      0.736
SFV39772.1
Lipid A export ATP-binding/permease protein MsbA.
 
     
0.585
SFV41789.1
YbbL ABC transporter ATP-binding protein.
 
     
0.576
SFV41734.1
L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation.
  
 0.413
LAC1533_0638
ABC transporter ATP-binding protein.
 
     
0.407
Your Current Organism:
Lactobacillus acidipiscis
NCBI taxonomy Id: 89059
Other names: CCUG 42961 [[Lactobacillus cypricasei]], CCUG 46556, CIP 106393 [[Lactobacillus cypricasei]], CIP 106750, DSM 15353 [[Lactobacillus cypricasei]], DSM 15836, JCM 10692, KCTC 13900 [[Lactobacillus cypricasei]], L. acidipiscis, Lactobacillus acidipiscis Tanasupawat et al. 2000, Lactobacillus cypricasei, Lactobacillus cypricasei Lawson et al. 2001, Lactobacillus sp. FS60-1, Lactobacillus sp. FS60-1T, Lactobacillus sp. LMG 17676, Lactobacillus sp. LMK3, NBRC 102163, NRIC 0300, PCU 207, PCU:207, strain FS60-1, strain LMK3 [[Lactobacillus cypricasei]]
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