SFV41749.1 protein (Lactobacillus acidipiscis)

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second shell of interactors

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

SFV41749.1

Blue copper oxidase CueO precursor. (509 aa)

Predicted Functional Partners:

SFV41748.1

0.789

SFV40007.1

0.515

SFV40271.1

0.453

SFV41711.1

0.428

SFV39728.1

0.411

SFV41605.1

0.411

Lead-2

0.401

Your Current Organism:

Lactobacillus acidipiscis

NCBI taxonomy Id: 89059
Other names: CCUG 42961 [[Lactobacillus cypricasei]], CCUG 46556, CIP 106393 [[Lactobacillus cypricasei]], CIP 106750, DSM 15353 [[Lactobacillus cypricasei]], DSM 15836, JCM 10692, KCTC 13900 [[Lactobacillus cypricasei]], L. acidipiscis, Lactobacillus acidipiscis Tanasupawat et al. 2000, Lactobacillus cypricasei, Lactobacillus cypricasei Lawson et al. 2001, Lactobacillus sp. FS60-1, Lactobacillus sp. FS60-1T, Lactobacillus sp. LMG 17676, Lactobacillus sp. LMK3, NBRC 102163, NRIC 0300, PCU 207, PCU:207, strain FS60-1, strain LMK3 [[Lactobacillus cypricasei]]

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lead-2	SFV40007.1	LAC1533_0463	LAC1533_0587	Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase.	Copper chaperone.	0.773
Lead-2	SFV41749.1	LAC1533_0463	LAC1533_2323	Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase.	Blue copper oxidase CueO precursor.	0.401
SFV39728.1	SFV41605.1	LAC1533_0308	LAC1533_2180	Fumarate reductase flavoprotein subunit.	Fumarate reductase, flavoprotein subunit precursor.	0.953
SFV39728.1	SFV41749.1	LAC1533_0308	LAC1533_2323	Fumarate reductase flavoprotein subunit.	Blue copper oxidase CueO precursor.	0.411
SFV40007.1	Lead-2	LAC1533_0587	LAC1533_0463	Copper chaperone.	Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase.	0.773
SFV40007.1	SFV41749.1	LAC1533_0587	LAC1533_2323	Copper chaperone.	Blue copper oxidase CueO precursor.	0.515
SFV40271.1	SFV41749.1	LAC1533_0851	LAC1533_2323	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	Blue copper oxidase CueO precursor.	0.453
SFV41605.1	SFV39728.1	LAC1533_2180	LAC1533_0308	Fumarate reductase, flavoprotein subunit precursor.	Fumarate reductase flavoprotein subunit.	0.953
SFV41605.1	SFV41749.1	LAC1533_2180	LAC1533_2323	Fumarate reductase, flavoprotein subunit precursor.	Blue copper oxidase CueO precursor.	0.411
SFV41711.1	SFV41749.1	LAC1533_2285	LAC1533_2323	UDP-glucose 4-epimerase.	Blue copper oxidase CueO precursor.	0.428
SFV41748.1	SFV41749.1	LAC1533_2322	LAC1533_2323	FIG00742807: hypothetical protein.	Blue copper oxidase CueO precursor.	0.789
SFV41749.1	Lead-2	LAC1533_2323	LAC1533_0463	Blue copper oxidase CueO precursor.	Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase.	0.401
SFV41749.1	SFV39728.1	LAC1533_2323	LAC1533_0308	Blue copper oxidase CueO precursor.	Fumarate reductase flavoprotein subunit.	0.411
SFV41749.1	SFV40007.1	LAC1533_2323	LAC1533_0587	Blue copper oxidase CueO precursor.	Copper chaperone.	0.515
SFV41749.1	SFV40271.1	LAC1533_2323	LAC1533_0851	Blue copper oxidase CueO precursor.	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.453
SFV41749.1	SFV41605.1	LAC1533_2323	LAC1533_2180	Blue copper oxidase CueO precursor.	Fumarate reductase, flavoprotein subunit precursor.	0.411
SFV41749.1	SFV41711.1	LAC1533_2323	LAC1533_2285	Blue copper oxidase CueO precursor.	UDP-glucose 4-epimerase.	0.428
SFV41749.1	SFV41748.1	LAC1533_2323	LAC1533_2322	Blue copper oxidase CueO precursor.	FIG00742807: hypothetical protein.	0.789

Network Stats

number of nodes:

4

number of edges:

4

average node degree:

2

avg. local clustering coefficient:

0.833

expected number of edges:

3

PPI enrichment p-value:

0.336

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 107

1.75

4.58

1.41e-16

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

11 of 52

2.06

6.93

5.39e-20

GO:0019843

rRNA binding

8 of 41

2.02

4.98

4.56e-13

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

11 of 59

2.0

6.67

3.08e-20

GO:0044391

Ribosomal subunit

4 of 13

2.22

3.23

2.96e-07

GO:0015934

Large ribosomal subunit

3 of 7

2.37

2.67

7.57e-06

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1469

Structural constituent of ribosome

11 of 29

2.31

8.93

3.34e-22

CL:1470

Structural constituent of ribosome

9 of 21

2.37

7.82

3.32e-18

CL:1471

Structural constituent of ribosome

7 of 15

2.4

6.27

7.14e-14

CL:1472

Mixed, incl. Large ribosomal subunit, and K Homology domain, type 2

6 of 9

2.56

5.87

2.37e-12

CL:1512

Small ribosomal subunit, and Repressor

2 of 5

2.34

1.29

0.0040

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

11 of 56

2.03

6.84

1.98e-20

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 39

1.99

4.16

1.13e-10

GOCC:0044391

Ribosomal subunit

4 of 18

2.08

2.7

2.62e-06

GOCC:0043229

Intracellular organelle

11 of 505

1.07

1.46

3.20e-10

GOCC:0015934

Large ribosomal subunit

2 of 7

2.19

1.3

0.0035

GOCC:0009507

Chloroplast

3 of 38

1.63

1.26

0.0019

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

11 of 60

2.0

6.56

6.35e-20

KW-0699

rRNA-binding

8 of 39

2.05

5.26

9.01e-14

KW-0820

tRNA-binding

2 of 14

1.89

0.94

0.0154

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