SDG10475.1 protein (Pseudomonas abietaniphila)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

SDG10475.1

Uncharacterized protein. (348 aa)

Predicted Functional Partners:

SDG10512.1

0.970

SDG10436.1

0.964

SDG10405.1

0.954

SDJ23306.1

0.898

SDG57794.1

0.875

SDG57886.1

0.850

SDH76386.1

0.850

SDG57921.1

0.842

SDH76353.1

0.841

SDG10546.1

0.801

Your Current Organism:

Pseudomonas abietaniphila

NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDG10405.1	SDG10436.1	SAMN05216605_101152	SAMN05216605_101153	Protein of unknown function.	Protein of unknown function.	0.969
SDG10405.1	SDG10475.1	SAMN05216605_101152	SAMN05216605_101154	Protein of unknown function.	Uncharacterized protein.	0.954
SDG10405.1	SDG10512.1	SAMN05216605_101152	SAMN05216605_101155	Protein of unknown function.	Hypothetical protein.	0.936
SDG10405.1	SDG10546.1	SAMN05216605_101152	SAMN05216605_101156	Protein of unknown function.	Predicted arabinose efflux permease, MFS family.	0.801
SDG10405.1	SDG57794.1	SAMN05216605_101152	SAMN05216605_102467	Protein of unknown function.	Hypothetical protein.	0.780
SDG10405.1	SDG57886.1	SAMN05216605_101152	SAMN05216605_102469	Protein of unknown function.	Protein of unknown function.	0.892
SDG10405.1	SDH76386.1	SAMN05216605_101152	SAMN05216605_10875	Protein of unknown function.	Protein of unknown function.	0.890
SDG10405.1	SDJ23306.1	SAMN05216605_101152	SAMN05216605_1243	Protein of unknown function.	Hypothetical protein.	0.779
SDG10436.1	SDG10405.1	SAMN05216605_101153	SAMN05216605_101152	Protein of unknown function.	Protein of unknown function.	0.969
SDG10436.1	SDG10475.1	SAMN05216605_101153	SAMN05216605_101154	Protein of unknown function.	Uncharacterized protein.	0.964
SDG10436.1	SDG10512.1	SAMN05216605_101153	SAMN05216605_101155	Protein of unknown function.	Hypothetical protein.	0.950
SDG10436.1	SDG10546.1	SAMN05216605_101153	SAMN05216605_101156	Protein of unknown function.	Predicted arabinose efflux permease, MFS family.	0.807
SDG10436.1	SDG57794.1	SAMN05216605_101153	SAMN05216605_102467	Protein of unknown function.	Hypothetical protein.	0.788
SDG10436.1	SDG57921.1	SAMN05216605_101153	SAMN05216605_102470	Protein of unknown function.	Protein of unknown function.	0.893
SDG10436.1	SDH76353.1	SAMN05216605_101153	SAMN05216605_10874	Protein of unknown function.	Protein of unknown function.	0.893
SDG10436.1	SDJ23306.1	SAMN05216605_101153	SAMN05216605_1243	Protein of unknown function.	Hypothetical protein.	0.789
SDG10475.1	SDG10405.1	SAMN05216605_101154	SAMN05216605_101152	Uncharacterized protein.	Protein of unknown function.	0.954
SDG10475.1	SDG10436.1	SAMN05216605_101154	SAMN05216605_101153	Uncharacterized protein.	Protein of unknown function.	0.964
SDG10475.1	SDG10512.1	SAMN05216605_101154	SAMN05216605_101155	Uncharacterized protein.	Hypothetical protein.	0.970
SDG10475.1	SDG10546.1	SAMN05216605_101154	SAMN05216605_101156	Uncharacterized protein.	Predicted arabinose efflux permease, MFS family.	0.801