STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG15630.1Diguanylate cyclase (GGDEF) domain-containing protein. (574 aa)    
Predicted Functional Partners:
SDI61951.1
Signal transduction histidine kinase.
  
 0.980
SDG15346.1
PAS/PAC sensor hybrid histidine kinase.
 
 0.971
SDI61742.1
PAS domain S-box-containing protein.
 
 0.971
SDH97710.1
Diguanylate cyclase/phosphodiesterase.
 
 0.969
SDH28509.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.966
SDH21652.1
Na+/proline symporter.
  
 0.965
SDH28531.1
Multi-sensor hybrid histidine kinase.
 
 0.961
SDH60304.1
Multi-sensor hybrid histidine kinase.
  
 0.961
SDG09001.1
PAS domain S-box-containing protein.
  
 0.957
SDH28314.1
PAS/PAC sensor hybrid histidine kinase.
 
 0.957
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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