STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG22316.1Serine/threonine protein kinase. (564 aa)    
Predicted Functional Partners:
SDG64967.1
Type III secretion protein D.
  
 
 0.946
SDG22355.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
    0.914
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.909
SDI61951.1
Signal transduction histidine kinase.
  
 0.891
SDH92783.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.882
SDG11520.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 
 0.874
SDH28531.1
Multi-sensor hybrid histidine kinase.
  
 0.872
SDH60304.1
Multi-sensor hybrid histidine kinase.
  
 0.872
SDH39334.1
Multi-sensor hybrid histidine kinase.
  
 0.871
SDH10493.1
Type VI secretion system protein ImpL.
  
 
 0.867
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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