STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG23540.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (346 aa)    
Predicted Functional Partners:
SDG23500.1
Peptide/nickel transport system permease protein.
 
 0.998
SDG23463.1
Peptide/nickel transport system permease protein.
 
 0.993
SDI44464.1
Dipeptide transport system permease protein.
 
 0.989
SDG23577.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.981
SDI44430.1
Dipeptide transport system permease protein.
 
 0.970
SDG23424.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.929
SDI44550.1
Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 
0.897
SDI06840.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.838
SDI44242.1
Peptide/nickel transport system substrate-binding protein/dipeptide transport system substrate-binding protein.
 
 
 0.823
SDI44393.1
Dipeptide transport system substrate-binding protein.
 
 
 0.784
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.