STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG24842.1Quinoprotein relay system zinc metallohydrolase 1. (309 aa)    
Predicted Functional Partners:
SDG24809.1
Sulfur-oxidizing protein SoxY.
 
     0.947
SDG24740.1
Cytochrome c-550 PedF.
 
     0.945
SDG24774.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
     0.938
SDG24534.1
PQQ-dependent catabolism-associated CXXCW motif protein.
 
 0.892
SDG24884.1
Alcohol dehydrogenase (cytochrome c).
 
   
 0.864
SDG07739.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
   
 0.861
SDG24689.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
     0.840
SDG24654.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
     0.817
SDG24573.1
ABC-2 type transport system permease protein.
 
     0.782
thiI
[ThiS-adenylate] sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
 0.774
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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