STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG53797.1Transcriptional regulator, XRE family with cupin sensor. (182 aa)    
Predicted Functional Partners:
SDH89850.1
Transcriptional regulator, XRE family with cupin sensor.
 
 0.886
SDH36663.1
Chorismate mutase.
  
 
 0.789
argA
N-acetylglutamate synthase.
    
  0.784
SDI30589.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.730
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
   
 0.715
SDH76451.1
Serine/threonine-protein kinase HipA.
  
 
 0.654
SDI20143.1
Serine/threonine-protein kinase HipA.
  
 
 0.654
SDJ46389.1
Serine/threonine-protein kinase HipA.
  
 
 0.654
SDH43645.1
Acetyltransferase (GNAT) domain-containing protein.
    
  0.645
SDJ02908.1
Gamma-glutamyl-gamma-aminobutyrate hydrolase.
 
  
 0.627
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.