STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG54495.1Outer membrane porin, OprD family. (446 aa)    
Predicted Functional Partners:
SDG79516.1
GlcNAc-PI de-N-acetylase.
  
     0.754
SDH89662.1
Protein of unknown function.
  
     0.746
SDG41501.1
Protein of unknown function.
  
     0.738
SDH20550.1
Helix-turn-helix domain-containing protein.
  
  
  0.735
SDH20512.1
Hypothetical protein.
  
     0.731
SDJ45820.1
Hypothetical protein.
  
     0.730
SDJ03268.1
Hypothetical protein.
  
     0.709
SDH19286.1
Hypothetical protein.
  
     0.699
SDH83014.1
Phospholipid transport system transporter-binding protein.
  
     0.675
SDI56093.1
Integrase; Belongs to the 'phage' integrase family.
  
     0.670
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.