STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG60202.1Nucleotide-binding universal stress protein, UspA family. (315 aa)    
Predicted Functional Partners:
SDI77450.1
Nucleotide-binding universal stress protein, UspA family.
  
     0.774
SDH35326.1
Metallo-beta-lactamase family protein.
 
    0.584
thiI
[ThiS-adenylate] sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
   
 0.525
SDI18172.1
Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.484
SDI52931.1
Response regulator receiver domain-containing protein.
 
     0.484
SDH65032.1
Protein of unknown function.
  
    0.464
SDG06580.1
PilZ domain-containing protein.
  
    0.457
SDJ25391.1
Hpt domain-containing protein.
  
     0.457
SDH65201.1
Phosphohistidine phosphatase, SixA.
 
  
  0.455
SDI04644.1
Regulator of RpoD, Rsd/AlgQ; Belongs to the Rsd/AlgQ family.
  
     0.453
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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