STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG63583.14-carboxymuconolactone decarboxylase. (131 aa)    
Predicted Functional Partners:
SDI32205.1
3-oxoadipate enol-lactonase.
 
 0.992
SDG63611.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.975
SDG63669.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
 
 0.950
SDG63643.1
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
 
 0.948
SDG19753.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.871
SDI31400.1
3-oxoadipate enol-lactonase.
 
 0.869
SDI32086.1
Glutaconate CoA-transferase subunit B.
 
 
 0.831
SDG09860.1
P-hydroxybenzoate 3-monooxygenase.
 
   
 0.778
SDH44524.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
 
 0.773
SDI32046.1
Glutaconate CoA-transferase subunit A.
 
 
 0.747
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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