Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG07739.1 | SDG77964.1 | SAMN05216605_10188 | SAMN05216605_103133 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Hypothetical protein. | 0.959 |
SDG07739.1 | SDH41550.1 | SAMN05216605_10188 | SAMN05216605_106173 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Z1 domain-containing protein. | 0.454 |
SDG07739.1 | SDH44798.1 | SAMN05216605_10188 | SAMN05216605_106247 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | ATP-dependent helicase HrpA. | 0.400 |
SDG07739.1 | SDH64948.1 | SAMN05216605_10188 | SAMN05216605_107236 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Ca2+-binding protein, EF-hand superfamily. | 0.460 |
SDG07739.1 | SDH83861.1 | SAMN05216605_10188 | SAMN05216605_108266 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.943 |
SDG07739.1 | SDI73045.1 | SAMN05216605_10188 | SAMN05216605_116115 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | ATP-dependent helicase HrpB. | 0.400 |
SDG07739.1 | nuoC | SAMN05216605_10188 | SAMN05216605_111203 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | NADH dehydrogenase subunit C /NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.999 |
SDG07739.1 | rpsC | SAMN05216605_10188 | SAMN05216605_12630 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.796 |
SDG07739.1 | sbcD | SAMN05216605_10188 | SAMN05216605_11740 | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.570 |
SDG77964.1 | SDG07739.1 | SAMN05216605_103133 | SAMN05216605_10188 | Hypothetical protein. | Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein. | 0.959 |
SDG77964.1 | SDG89986.1 | SAMN05216605_103133 | SAMN05216605_103458 | Hypothetical protein. | Homeodomain-like domain-containing protein. | 0.914 |
SDG77964.1 | SDH41550.1 | SAMN05216605_103133 | SAMN05216605_106173 | Hypothetical protein. | Z1 domain-containing protein. | 0.972 |
SDG77964.1 | SDH44798.1 | SAMN05216605_103133 | SAMN05216605_106247 | Hypothetical protein. | ATP-dependent helicase HrpA. | 0.913 |
SDG77964.1 | SDH64948.1 | SAMN05216605_103133 | SAMN05216605_107236 | Hypothetical protein. | Ca2+-binding protein, EF-hand superfamily. | 0.961 |
SDG77964.1 | SDH83861.1 | SAMN05216605_103133 | SAMN05216605_108266 | Hypothetical protein. | Ubiquinol-cytochrome c reductase cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. | 0.909 |
SDG77964.1 | SDI73045.1 | SAMN05216605_103133 | SAMN05216605_116115 | Hypothetical protein. | ATP-dependent helicase HrpB. | 0.913 |
SDG77964.1 | nuoC | SAMN05216605_103133 | SAMN05216605_111203 | Hypothetical protein. | NADH dehydrogenase subunit C /NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.979 |
SDG77964.1 | rpsC | SAMN05216605_103133 | SAMN05216605_12630 | Hypothetical protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.944 |
SDG77964.1 | sbcD | SAMN05216605_103133 | SAMN05216605_11740 | Hypothetical protein. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.930 |
SDG89986.1 | SDG77964.1 | SAMN05216605_103458 | SAMN05216605_103133 | Homeodomain-like domain-containing protein. | Hypothetical protein. | 0.914 |
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