STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG79405.1Carbamoyltransferase. (585 aa)    
Predicted Functional Partners:
SDG79440.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.913
SDG79516.1
GlcNAc-PI de-N-acetylase.
 
   
 0.845
SDG79478.1
Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family.
     
 0.824
SDG79316.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
   
 0.792
SDG79164.1
UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase.
 
   
 0.791
SDG79198.1
Heptose I phosphotransferase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
  
 0.780
SDG79278.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
   
 0.762
SDG79236.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
   
 0.743
SDH93227.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
     0.723
SDG07739.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
     
 0.707
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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